著書論文等- 木下 賢吾 -
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件数:95件
[2016]
1.[] IBiSA_Tools: A Computational Toolkit for Ion-Binding State Analysis in Molecular Dynamics Trajectories of Ion Channels..[PLoS One,11(12),(2016),e0167524-]Kasahara K and Kinoshita K
10.1371/journal.pone.0167524
2.[] NCMine: Core-peripheral based functional module detection using near-clique mining..[Bioinformatics,32(22),(2016),3454-3460]Tadaka S and Kinoshita K
10.1093/bioinformatics/btw488
3.[] Landscape of protein-small ligand binding modes..[Protein Sci,25(9),(2016),1659-1671]Kasahara K and Kinoshita K
10.1002/pro.2971
4.[] Discrepancies between human DNA, mRNA and protein reference sequences and their relation to single nucleotide variants in the human population..[Database (Oxford),2016,(2016),baw124-]Shirota M and Kinoshita K
10.1093/database/baw124
5.[] The Tohoku Medical Megabank Project: Design and Mission..[J Epidemiol,26(9),(2016),493-511]Kuriyama S, Yaegashi N, Nagami F, Arai T, Kawaguchi Y, Osumi N, Sakaida M, Suzuki Y, Nakayama K, Hashizume H, Tamiya G, Kawame H, Suzuki K, Hozawa A, Nakaya N, Kikuya M, Metoki H, Tsuji I, Fuse N, Kiyomoto H, Sugawara J, Tsuboi A, Egawa S, Ito K, Chida K, Ishii T, Tomita H, Taki Y, Minegishi N, Ishii N, Yasuda J, Igarashi K, Shimizu R, Nagasaki M, Koshiba S, Kinoshita K, Ogishima S, Takai-Igarashi T, Tominaga T, Tanabe O, Ohuchi N, Shimosegawa T, Kure S, Tanaka H, Ito S, Hitomi J, Tanno K, Nakamura M, Ogasawara K, Kobayashi S, Sakata K, Satoh M, Shimizu A, Sasaki M, Endo R, Sobue K, Study Group TT and Yamamoto M
10.2188/jea.JE20150268
6.[] The structural origin of metabolic quantitative diversity..[Sci Rep,6,(2016),31463-]Koshiba S, Motoike I, Kojima K, Hasegawa T, Shirota M, Saito T, Saigusa D, Danjoh I, Katsuoka F, Ogishima S, Kawai Y, Yamaguchi-Kabata Y, Sakurai M, Hirano S, Nakata J, Motohashi H, Hozawa A, Kuriyama S, Minegishi N, Nagasaki M, Takai-Igarashi T, Fuse N, Kiyomoto H, Sugawara J, Suzuki Y, Kure S, Yaegashi N, Tanabe O, Kinoshita K, Yasuda J and YamamotoM
10.1038/srep31463
7.[] Establishment of Protocols for Global Metabolomics by LC-MS for Biomarker Discovery..[PLoS One,11(8),(2016),e0160555-]Saigusa D, Okamura Y, Motoike IN, Katoh Y, Kurosawa Y, Saijyo R, Koshiba S, Yasuda J, Motohashi H, Sugawara J, Tanabe O, Kinoshita K and Yamamoto M
10.1371/journal.pone.0160555
8.[] Structural characterization of single nucleotide variants at ligand binding sites and enzyme active sites of human proteins..[Biophysics and Physicobiology,13,(2016),157-163]Yamada KD, Nishi H and Kinoshita K
10.2142/biophysico.13.0_157
9.[] Structural basis for the membrane association of ankyrinG via palmitoylation..[Sci Rep,6,(2016),23981-]Fujiwara Y, Kondo H. X, Shirota M, Kobayashi M, Takeshita K, Nakagawa A, Okamura Y and Kinoshita K
10.1038/srep23981
10.[] Ion Concentration- and Voltage-Dependent Push and Pull Mechanisms of Potassium Channel Ion Conduction..[PLoS One,11(3),(2016),e0150716-]Kasahara K, Shirota M and Kinoshita K
10.1371/journal.pone.0150716
11.[] Distribution of single nucleotide variants on protein-protein interaction sites and its relation to minor allele frequency..[Protein Sci,25(2),(2016),316-321]Nishi H, Nakata J and Kinoshita K
10.1002/pro.2845
12.[] NLDB: a database for 3D protein-ligand interactions in enzymatic reactions..[J Struct Funct Genomics,(2016)]Murakami Y, Omori S and Kinoshita K
10.1007/s10969-016-9206-0
[2015]
13.[] Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals..[Nat Commun,6,(2015),8018-]Nagasaki M, Yasuda J, Katsuoka F, Nariai N, Kojima K, Kawai Y, Yamaguchi-Kabata Y, Yokozawa J, Danjoh I, Saito S, Sato Y, Mimori T, Tsuda K, Saito R, Pan X, Nishikawa S, Ito S, Kuroki Y, Tanabe O, Fuse N, Kuriyama S, Kiyomoto H, Hozawa A, Minegishi N, Douglas Engel J, Kinoshita K, Kure S, Yaegashi N; ToMMo Japanese Reference Panel Project, and Yamamoto M
10.1038/ncomms9018
14.[] Comparison of Gene Coexpression Profiles and Construction of Conserved Gene Networks to Find Functional Modules..[PLoS One,10(7),(2015),e0132039-]Okamura Y, Obayashi T and Kinoshita K
10.1371/journal.pone.0132039
15.[] COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems..[Nucleic Acids Res,43(Database issue),(2015),D82-D86]Okamura Y, Aoki Y, Obayashi T, Tadaka S, Ito S, Narise T and Kinoshita K
10.1093/nar/gku1163
[2014]
16.[] Validation of multiple single nucleotide variation calls by additional exome analysis with a semiconductor sequencer to supplement data of whole-genome sequencing of a human population..[BMC Genomics,15,(2014),673-]Motoike IN, Matsumoto M, Danjoh I, Katsuoka F, Kojima K, Nariai N, Sato Y, Yamaguchi-Kabata Y, Ito S, Kudo H, Nishijima I, Nishikawa S, Pan X, Saito R, Saito S, Saito T, Shirota M, Tsuda K, Yokozawa J, Igarashi K, Minegishi N, Tanabe O, Fuse N, Nagasaki M, Kinoshita K, Yasuda J and Yamamoto M
10.1186/1471-2164-15-673
17.[] Blind prediction of interfacial water positions in CAPRI..[Proteins,82(4),(2014),620-632]Lensink MF, Moal IH, Bates PA, Kastritis PL, Melquiond AS, Karaca E, Schmitz C, van Dijk M, Bonvin AM, Eisenstein M, Jiménez-García B, Grosdidier S, Solernou A, Pérez-Cano L, Pallara C, Fernández-Recio J, Xu J, Muthu P, Praneeth Kilambi K, Gray JJ, Grudinin S, Derevyanko G, Mitchell JC, Wieting J, Kanamori E, Tsuchiya Y, Murakami Y, Sarmiento J, Standley DM, Shirota M, Kinoshita K, Nakamura H, Chavent M, Ritchie DW, Park H, Ko J, Lee H, Seok C, Shen Y, Kozakov D, Vajda S, Kundrotas PJ, Vakser IA, Pierce BG, Hwang H, Vreven T, Weng Z, Buch I, Farkash E, Wolfson HJ, Zacharias M, Qin S, Zhou HX, Huang SY, Zou X, Wojdyla JA, Kleanthous C and Wodak SJ
10.1002/prot.24439
18.[] ATTED-II in 2014: evaluation of gene coexpression in agriculturally important plants..[Plant Cell Physiol,55(1),(2014),e6-]Obayashi T, Okamura Y, Ito S, Tadaka S, Aoki Y, Shirota M and Kinoshita K
10.1093/pcp/pct178
19.[] GIANT: pattern analysis of molecular interactions in 3D structures of protein-small ligand complexes..[BMC Bioinformatics,15,(2014),12-]Kasahara K and Kinoshita K
10.1186/1471-2105-15-12
[2013]
20.[] Exhaustive comparison and classification of ligand-binding surfaces in proteins..[Protein Sci,22(10),(2013),1379-1391]Murakami Y, Kinoshita K, Kinjo AR and Nakamura H
10.1002/pro.2329
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