Researchers Information
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Books, Original Papers & Review Papers
Name
OBAYASHI Takeshi
Affiliation
Graduate School of Information Sciences
Department of Applied Information Sciences
Applied Informatics for Human and Life Science
Systems Bioinformatics
Title
Associate Professor
Date of Birth
1975.05
Research Fields
  • Applied genome science
  • Plant physiology/molecule
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Keywords
Gene network,Gene coexpression,Database,Evolution
Academic Society Membership
  • Japanese Society for Bioinformatics
  • International Society for Computational Biology
  • The Japanese Society of Plant Physiologists
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Activity of Academic Society (Post)
  • Japanese Society for Bioinformatics, Councilors(2013-2017)
  • Japanese Society for Bioinformatics, 会計幹事(2015-2017)
  • The Japanese Society of Plant Physiologists, 広報委員(2012-2016)
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Books

バイオインフォマティクス入門.[慶應義塾大学出版会,(2015)]秋山 泰 中井 謙太 冨田 勝 向井 有理 長崎 英樹 中村 保一 池田 修己 向井 友花 越中谷賢治 飯田 泰広 濱田 康太 榊原 康文 舟橋 啓 鎌田真由美 小森 隆 佐藤 健吾 浜田 道昭 内山 郁夫 阿部 貴志 野口 英樹 白井 剛 土方 敦司 諏訪 牧子 有田 正規 後藤 修 大林 武 竹本 和弘 櫻井 望
ISBN978-4766422511


実験医学2011年9月増刊号「バイオデータベースとソフトウェアアップデート」.[羊土社,(2011)]有田正則編
ISBN978-4-7581-0290-2


ゲノムが拓く生態学―遺伝子の網羅的解析で迫る植物の生きざま.[文一総合出版,(2011)]永野 惇 (編集), 森長 真一 (編集), 種生物学会 (編集)
ISBN978-4829910870


実験医学MOOK「トランスポートソーム-生体膜輸送機構の全体像に迫る―基礎、臨床、創薬応用研究の最新成果」.[メディカルドゥ,(2011)]金井好克編
ISBN4944157495


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Original Papers

ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression..[Plant Cell Physiol,57(1),(2016),e5]Aoki, Yuichi Okamura, Yasunobu Tadaka, Shu Kinoshita, Kengo Obayashi, Takeshi
10.1093/pcp/pcv165
http://www.ncbi.nlm.nih.gov/pubmed/26546318


COXPRESdb: a database of comparative gene coexpression networks of eleven species for mammals..[Nucleic Acids Res,41(D1),(2013),D1014-D1020]Obayashi, Takeshi Okamura, Yasunobu Ito, Satoshi Tadaka, Shu Motoike, Ikuko N Kinoshita, Kengo
10.1093/nar/gks1014
http://www.ncbi.nlm.nih.gov/pubmed/23203868


ATTED-II updates: condition-specific gene coexpression to extend coexpression analyses and applications to a broad range of flowering plants..[Plant Cell Physiol,52(2),(2011),213-219]Obayashi, Takeshi Nishida, Kozo Kasahara, Kota Kinoshita, Kengo
10.1093/pcp/pcq203
http://www.ncbi.nlm.nih.gov/pubmed/21217125


Rank of correlation coefficient as a comparable measure for biological significance of gene coexpression..[DNA Res,16(5),(2009),249-260]Obayashi, Takeshi Kinoshita, Kengo
10.1093/dnares/dsp016
http://www.ncbi.nlm.nih.gov/pubmed/19767600


ATTED-II provides coexpressed gene networks for Arabidopsis..[Nucleic Acids Res,37(Database issue),(2009),D987-D991]Obayashi, Takeshi Hayashi, Shinpei Saeki, Motoshi Ohta, Hiroyuki Kinoshita, Kengo
10.1093/nar/gkn807
http://www.ncbi.nlm.nih.gov/pubmed/18953027


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Review Papers

共発現情報から見る遺伝子機能ネットワーク.[KASEAA,49(1), (2011), 48-56]Obayashi T, Kinoshita K


Co-expression tools for plant biology: opportunities for hypothesis generation and caveats..[Plant Cell Environ,32(12), (2009), 1633-1651]Usadel, Bjorn Obayashi, Takeshi Mutwil, Marek Giorgi, Federico M Bassel, George W Tanimoto, Mimi Chow, Amanda Steinhauser, Dirk Persson, Staffan Provart, Nicholas J
10.1111/j.1365-3040.2009.02040.x
http://www.ncbi.nlm.nih.gov/pubmed/19712066


Coexpression landscape in ATTED-II: usage of gene list and gene network for various types of pathways..[J Plant Res,123(3), (2010), 311-319]Obayashi, Takeshi Kinoshita, Kengo
10.1007/s10265-010-0333-6
http://www.ncbi.nlm.nih.gov/pubmed/20383554


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Honours, Awards and Prizes
  • 平成27年度科学技術分野の文部科学大臣表彰若手科学者賞(2015)
  • 2014年度船井学術賞(2015)
  • 2014年度日本植物生理学会奨励賞(2014)
  • Oxford Journals - Japanese Society for Bioinformatics Prize, 2013(2013)
  • BSJ Special Award, 2009(2009)
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Web Site
http://www.sb.ecei.tohoku.ac.jp/index-en.html
Updated on
2018.12.01
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